PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877752.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 290aa MW: 32052.8 Da PI: 7.4349

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	3.9e-42	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++C++apyfp +qp+kf nvh+++Gasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_015877752.1 14 PCAACKFQRRKCTQECIFAPYFPPDQPQKFTNVHRVYGASNVAKLLNELNSVHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLRQVQSDLY 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_015877752.1 109 AAKKE 113 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSLSSSSSSS SHSPCAACKF QRRKCTQECI FAPYFPPDQP QKFTNVHRVY GASNVAKLLN 60 ELNSVHREDA VTSLAYEAEA RLRDPVYGCV GFISILQNRL RQVQSDLYAA KKELAAYIGP 120 QAMMIQPQPQ HAAAADYNIN MNMSMPMPML GIPTGPSQGS GGGGDHLLIR DSHLQQQQMY 180 EAQPQQQQQQ ELVRYNSSSG GFDPVSTLGR GGGFNNHQMG GNGNTSAMNN MSPSLGLGIF 240 DQNVCQIHQP PAQYHHPIEY HQIQAQLLPY QQPQQLHHSH HKSVPDDSQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877752.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	3e-68	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M5W6J8	7e-80	M5W6J8_PRUPE; Uncharacterized protein
STRING	VIT_07s0197g00020.t01	6e-78	(Vitis vinifera)
STRING	VIT_07s0197g00030.t01	5e-78	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-62	ASYMMETRIC LEAVES 2-like 1