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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015877752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 290aa MW: 32052.8 Da PI: 7.4349 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 3.9e-42 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++C++apyfp +qp+kf nvh+++Gasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_015877752.1 14 PCAACKFQRRKCTQECIFAPYFPPDQPQKFTNVHRVYGASNVAKLLNELNSVHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLRQVQSDLY 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_015877752.1 109 AAKKE 113 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.238 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-41 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSLSSSSSSS SHSPCAACKF QRRKCTQECI FAPYFPPDQP QKFTNVHRVY GASNVAKLLN 60 ELNSVHREDA VTSLAYEAEA RLRDPVYGCV GFISILQNRL RQVQSDLYAA KKELAAYIGP 120 QAMMIQPQPQ HAAAADYNIN MNMSMPMPML GIPTGPSQGS GGGGDHLLIR DSHLQQQQMY 180 EAQPQQQQQQ ELVRYNSSSG GFDPVSTLGR GGGFNNHQMG GNGNTSAMNN MSPSLGLGIF 240 DQNVCQIHQP PAQYHHPIEY HQIQAQLLPY QQPQQLHHSH HKSVPDDSQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877752.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 3e-68 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | M5W6J8 | 7e-80 | M5W6J8_PRUPE; Uncharacterized protein | ||||
STRING | VIT_07s0197g00020.t01 | 6e-78 | (Vitis vinifera) | ||||
STRING | VIT_07s0197g00030.t01 | 5e-78 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-62 | ASYMMETRIC LEAVES 2-like 1 |